Talks

April 10, 2025 - University of Chicago, Department of Human Genetics
January 27, 2025 - Duke Computational Biology and Bioinformatics
Tidyomics: enabling tidy data analysis workflows for complex biological data – qmd source
August 2024 - “Strategies for Cross-Cohort and Bioank Analyses in Precision Medicine”, organized by Jean Yang and Katherina Kechris, JSM 2024, Portland, Oregon
April 2024 - Genetics, Bioinformatics, and Systems Biology, University of California San Diego
April 2024 - Department of Genetics, Washington University School of Medicine
March 2024 - Psychiatric Genomics Consortium (PGC) Worldwide Lab Meeting (WWL)
Tidyomics - a R/Bioconductor framework for exploratory analysis of genomic data
YouTube ▶
March 2024 - Center for Genomic Science Innovation, University of Wisconsin at Madison
February 2024 - Biometric Colloquium, German Region of the International Biometric Society
February 2024 - IGVF MPRA Workshop, Lübeck, Germany
Multiple signal eQTL and GWAS loci and MPRA
February 2024 - Department of Statistics, Technische Universität Dortmund
November 2023 - Analysis of RNA sequencing data with R/Bioconductor (online)
October 2023 - Center for Public Health Genomics, University of Virginia
Tidy analysis of genomic data
September 2023 - Biostatistics Department, University of Michigan
August 2023 - BioC2023 contributed workshop with Stefano Mangiola
Tidy genomic and transcriptomic analyses
June 2023 - CSAMA - Transcriptomics lecture series, Introduction to bootstrapping
March 2023 - ENAR - Advances in Statistical Methods for Cell-Type-Specific Analyses, invited
Cell-Type-Specific Gene Regulation in Human Neural Progenitors and Neuronal Progeny
March 2023 - Computational Health Department, Helmholtz Zentrum Munchen
December 2022 - Tidy Genomics Analysis Workshop with Stefano Mangiola
YouTube ▶ ~ Tidy Enrichment Analysis and Tidy Transcriptomics
Slides and R code: Tidy Enrichment, Tidy Transcriptomics
November 2022 - Statistics Department, Texas A&M University
YouTube ▶ ~ Statistical challenges in analysis of tumor subtypes
October 2022 - Biostatistics Department, University of Washington
July 2022 - BioC2022 contributed workshop with Euphy Wu
YouTube ▶ ~ SEESAW: Statistical Estimation Of Allelic Expression Using Salmon And Swish
March 2022 - ENAR - Statistical Methods for Single-Cell Sequencing Data, invited
Quantification Uncertainty in Single-Cell Expression Data
March 2022 - MRC Integrative Epidemiology Unit, University of Bristol
YouTube ▶ ~ Gene-to-trait effect estimation with MRLocus
December 2021 - Institute for Genome Sciences, UMD Baltimore
YouTube ▶ ~ Isoform and Allelic Analysis for RNA-seq Data Accounting for Quantification Uncertainty
September 2021 - Department of Biostatistics, VCU
August 2021 - JSM - Genomic in Neuroscience, invited
June 2021 - Genetics, Genomics and Informatics Virtual Seminar, The University of Tennessee Health Science Center
May 2021 - Bioinformatics Chat with Roman Cheplyaka
Podcast 🎙 ~ Differential gene expression and DESeq2
April 2021 - MAQC2021
Bias correction and reference hashing for accurate RNA-seq quantification
YouTube ▶ ~ slides pt1 slides pt2
3rd place MAQC Scientist Research Award
December 2020 - Department of Statistics, Penn State University
Assessing Consistency of Bulk and Single Cell Unsupervised Multi-Modal Methods
December 2020 - Institute for Personalized Medicine Seminar Series, Icahn School of Medicine, Mount Sinai Hospital, Robust and reproducible genomic data analysis
September 2020 - R-Ladies Tunis
YouTube ▶ ~ Introduction to RNA-seq pipelines
July 2020 - BioC2020 contributed workshop with Avi Srivastava
YouTube ▶ ~ Importing alevin scRNA-seq counts into R/Bioconductor
June 2020 - BIRS: Mathematical Frameworks for Integrative Analysis of Emerging Biological Data Types
BIRS ▶ ~ Assessing Consistency of Single Cell Unsupervised Multi-Modal Methods
March 2020 - ENAR - Recent advanced and opportunities in large scale and multi-omic single cell data analysis, invited
Assessing consistency of unsupervised single-cell multi-omic methods
March 2020 - Human Genetics Seminar Series, University of Utah
Robust and reproducible genomic data analysis
December 2019 - Statistical Genetics Seminar, Biostatistics Department, Johns Hopkins University
Genetically regulated tumor gene expression in the Carolina Breast Cancer Study
November 2019 - APHA - Spiegelman Awardee Invited Session - organized by Raphael Gottardo Genetically regulated tumor gene expression in the Carolina Breast Cancer Study
July 2019 - JSM - Making an Impact in Statistics Education through Innovation and Outreach, invited
Rmarkdown Workflows Make New Statistical Methods Accessible to Biomedical Researchers
May 2019 - Symposium on Data Science & Statistics (SDSS) - Democratizing Data Science with Workflows, invited
Publishing Literate Programming Workflows in Scientific Journals
March 2019 - ENAR - Teaching Data Science through Case Studies, invited
Teaching Genomic Data Science
March 2019 - Department of Biostatistics and Bioinformatics, Emory University
Assessing consistency of unsupervised multi-omics methods
February 2019 - Epigenetics and Stem Cell Biology seminar series, NIEHS
November 2018 - Epigenetics and Epigenomics Program Seminar Series, Duke University
October 2018 - Computational Biology & Bioinformatics Series, Duke University
September 2018 - Department of Biostatistics, Brown University
Adaptive priors for estimating effect size with genomic data
July 2018 - BioC2018, Toronto
Automatic metadata and transcript ranges with tximeta
May 2018 - Bioinformatics Research Center Seminar Series, North Carolina State University
March 2018 - ENAR - Teaching Data Science at All Levels, invited
“Teaching Data Science for Life Sciences”
February 2018 - Center for Public Health Genomics, UVa
YouTube ▶ ~ Fragment-level bias modeling for RNA-seq Data Analysis
December 2016 - Computational Biology, Bioinformatics & Genomics, University of Maryland, College Park
October 2016 - Triangle Statistical Genetics Meeting*, SAS Campus, Cary