Session information
## R version 4.0.0 (2020-04-24)
## Platform: x86_64-apple-darwin17.0 (64-bit)
## Running under: macOS Catalina 10.15.5
##
## Matrix products: default
## BLAS: /System/Library/Frameworks/Accelerate.framework/Versions/A/Frameworks/vecLib.framework/Versions/A/libBLAS.dylib
## LAPACK: /Library/Frameworks/R.framework/Versions/4.0/Resources/lib/libRlapack.dylib
##
## locale:
## [1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8
##
## attached base packages:
## [1] parallel stats4 stats graphics grDevices datasets
## [7] utils methods base
##
## other attached packages:
## [1] apeglm_1.11.0 GenomicFeatures_1.41.0
## [3] bookdown_0.20 BiocParallel_1.23.0
## [5] testthat_2.3.2 rmarkdown_2.3
## [7] devtools_2.3.0 usethis_1.6.1
## [9] fishpond_1.5.33 IHW_1.17.0
## [11] ggrepel_0.8.2 ggplot2_3.3.0
## [13] DESeq2_1.29.3 rafalib_1.0.0
## [15] org.Mm.eg.db_3.11.1 AnnotationDbi_1.51.0
## [17] SummarizedExperiment_1.19.2 DelayedArray_0.15.1
## [19] matrixStats_0.56.0 Biobase_2.49.0
## [21] GenomicRanges_1.41.1 GenomeInfoDb_1.25.0
## [23] IRanges_2.23.4 S4Vectors_0.27.5
## [25] BiocGenerics_0.35.4 tximeta_1.7.3
## [27] dplyr_0.8.5 readr_1.3.1
##
## loaded via a namespace (and not attached):
## [1] backports_1.1.6 AnnotationHub_2.21.0
## [3] BiocFileCache_1.13.0 servr_0.17
## [5] plyr_1.8.6 lazyeval_0.2.2
## [7] splines_4.0.0 lpsymphony_1.17.0
## [9] digest_0.6.25 ensembldb_2.13.1
## [11] htmltools_0.4.0 fansi_0.4.1
## [13] magrittr_1.5 memoise_1.1.0
## [15] remotes_2.1.1 Biostrings_2.57.0
## [17] annotate_1.67.0 askpass_1.1
## [19] bdsmatrix_1.3-4 prettyunits_1.1.1
## [21] colorspace_1.4-1 blob_1.2.1
## [23] rappdirs_0.3.1 xfun_0.13
## [25] callr_3.4.3 crayon_1.3.4
## [27] RCurl_1.98-1.2 jsonlite_1.6.1
## [29] tximport_1.17.0 genefilter_1.71.0
## [31] survival_3.1-12 glue_1.4.0
## [33] gtable_0.3.0 zlibbioc_1.35.0
## [35] XVector_0.29.0 pkgbuild_1.0.8
## [37] abind_1.4-5 scales_1.1.1
## [39] mvtnorm_1.1-0 DBI_1.1.0
## [41] Rcpp_1.0.4.6 xtable_1.8-4
## [43] progress_1.2.2 emdbook_1.3.12
## [45] bit_1.1-15.2 httr_1.4.1
## [47] RColorBrewer_1.1-2 ellipsis_0.3.0
## [49] pkgconfig_2.0.3 XML_3.99-0.3
## [51] farver_2.0.3 dbplyr_1.4.3
## [53] locfit_1.5-9.4 utf8_1.1.4
## [55] reshape2_1.4.4 tidyselect_1.0.0
## [57] labeling_0.3 rlang_0.4.6
## [59] later_1.0.0 munsell_0.5.0
## [61] BiocVersion_3.12.0 tools_4.0.0
## [63] cli_2.0.2 RSQLite_2.2.0
## [65] fdrtool_1.2.15 evaluate_0.14
## [67] stringr_1.4.0 fastmap_1.0.1
## [69] yaml_2.2.1 processx_3.4.2
## [71] knitr_1.28 bit64_0.9-7
## [73] fs_1.4.1 purrr_0.3.4
## [75] AnnotationFilter_1.13.0 mime_0.9
## [77] slam_0.1-47 biomaRt_2.45.0
## [79] compiler_4.0.0 rstudioapi_0.11
## [81] curl_4.3 interactiveDisplayBase_1.27.0
## [83] tibble_3.0.1 geneplotter_1.67.0
## [85] stringi_1.4.6 ps_1.3.3
## [87] desc_1.2.0 lattice_0.20-41
## [89] ProtGenerics_1.21.0 Matrix_1.2-18
## [91] vctrs_0.2.4 pillar_1.4.4
## [93] lifecycle_0.2.0 BiocManager_1.30.10
## [95] bitops_1.0-6 qvalue_2.21.0
## [97] httpuv_1.5.2 rtracklayer_1.49.3
## [99] R6_2.4.1 promises_1.1.0
## [101] codetools_0.2-16 sessioninfo_1.1.1
## [103] MASS_7.3-51.6 gtools_3.8.2
## [105] assertthat_0.2.1 pkgload_1.0.2
## [107] openssl_1.4.1 rprojroot_1.3-2
## [109] withr_2.2.0 GenomicAlignments_1.25.0
## [111] Rsamtools_2.5.0 GenomeInfoDbData_1.2.3
## [113] hms_0.5.3 grid_4.0.0
## [115] coda_0.19-3 bbmle_1.0.23.1
## [117] numDeriv_2016.8-1.1 shiny_1.4.0.2
## [119] tinytex_0.22