Chapter 5 Session information

## R version 4.0.0 (2020-04-24)
## Platform: x86_64-apple-darwin17.0 (64-bit)
## Running under: macOS Catalina 10.15.5
## 
## Matrix products: default
## BLAS:   /System/Library/Frameworks/Accelerate.framework/Versions/A/Frameworks/vecLib.framework/Versions/A/libBLAS.dylib
## LAPACK: /Library/Frameworks/R.framework/Versions/4.0/Resources/lib/libRlapack.dylib
## 
## locale:
## [1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8
## 
## attached base packages:
## [1] parallel  stats4    stats     graphics  grDevices datasets 
## [7] utils     methods   base     
## 
## other attached packages:
##  [1] apeglm_1.11.0               GenomicFeatures_1.41.0     
##  [3] bookdown_0.20               BiocParallel_1.23.0        
##  [5] testthat_2.3.2              rmarkdown_2.3              
##  [7] devtools_2.3.0              usethis_1.6.1              
##  [9] fishpond_1.5.33             IHW_1.17.0                 
## [11] ggrepel_0.8.2               ggplot2_3.3.0              
## [13] DESeq2_1.29.3               rafalib_1.0.0              
## [15] org.Mm.eg.db_3.11.1         AnnotationDbi_1.51.0       
## [17] SummarizedExperiment_1.19.2 DelayedArray_0.15.1        
## [19] matrixStats_0.56.0          Biobase_2.49.0             
## [21] GenomicRanges_1.41.1        GenomeInfoDb_1.25.0        
## [23] IRanges_2.23.4              S4Vectors_0.27.5           
## [25] BiocGenerics_0.35.4         tximeta_1.7.3              
## [27] dplyr_0.8.5                 readr_1.3.1                
## 
## loaded via a namespace (and not attached):
##   [1] backports_1.1.6               AnnotationHub_2.21.0         
##   [3] BiocFileCache_1.13.0          servr_0.17                   
##   [5] plyr_1.8.6                    lazyeval_0.2.2               
##   [7] splines_4.0.0                 lpsymphony_1.17.0            
##   [9] digest_0.6.25                 ensembldb_2.13.1             
##  [11] htmltools_0.4.0               fansi_0.4.1                  
##  [13] magrittr_1.5                  memoise_1.1.0                
##  [15] remotes_2.1.1                 Biostrings_2.57.0            
##  [17] annotate_1.67.0               askpass_1.1                  
##  [19] bdsmatrix_1.3-4               prettyunits_1.1.1            
##  [21] colorspace_1.4-1              blob_1.2.1                   
##  [23] rappdirs_0.3.1                xfun_0.13                    
##  [25] callr_3.4.3                   crayon_1.3.4                 
##  [27] RCurl_1.98-1.2                jsonlite_1.6.1               
##  [29] tximport_1.17.0               genefilter_1.71.0            
##  [31] survival_3.1-12               glue_1.4.0                   
##  [33] gtable_0.3.0                  zlibbioc_1.35.0              
##  [35] XVector_0.29.0                pkgbuild_1.0.8               
##  [37] abind_1.4-5                   scales_1.1.1                 
##  [39] mvtnorm_1.1-0                 DBI_1.1.0                    
##  [41] Rcpp_1.0.4.6                  xtable_1.8-4                 
##  [43] progress_1.2.2                emdbook_1.3.12               
##  [45] bit_1.1-15.2                  httr_1.4.1                   
##  [47] RColorBrewer_1.1-2            ellipsis_0.3.0               
##  [49] pkgconfig_2.0.3               XML_3.99-0.3                 
##  [51] farver_2.0.3                  dbplyr_1.4.3                 
##  [53] locfit_1.5-9.4                utf8_1.1.4                   
##  [55] reshape2_1.4.4                tidyselect_1.0.0             
##  [57] labeling_0.3                  rlang_0.4.6                  
##  [59] later_1.0.0                   munsell_0.5.0                
##  [61] BiocVersion_3.12.0            tools_4.0.0                  
##  [63] cli_2.0.2                     RSQLite_2.2.0                
##  [65] fdrtool_1.2.15                evaluate_0.14                
##  [67] stringr_1.4.0                 fastmap_1.0.1                
##  [69] yaml_2.2.1                    processx_3.4.2               
##  [71] knitr_1.28                    bit64_0.9-7                  
##  [73] fs_1.4.1                      purrr_0.3.4                  
##  [75] AnnotationFilter_1.13.0       mime_0.9                     
##  [77] slam_0.1-47                   biomaRt_2.45.0               
##  [79] compiler_4.0.0                rstudioapi_0.11              
##  [81] curl_4.3                      interactiveDisplayBase_1.27.0
##  [83] tibble_3.0.1                  geneplotter_1.67.0           
##  [85] stringi_1.4.6                 ps_1.3.3                     
##  [87] desc_1.2.0                    lattice_0.20-41              
##  [89] ProtGenerics_1.21.0           Matrix_1.2-18                
##  [91] vctrs_0.2.4                   pillar_1.4.4                 
##  [93] lifecycle_0.2.0               BiocManager_1.30.10          
##  [95] bitops_1.0-6                  qvalue_2.21.0                
##  [97] httpuv_1.5.2                  rtracklayer_1.49.3           
##  [99] R6_2.4.1                      promises_1.1.0               
## [101] codetools_0.2-16              sessioninfo_1.1.1            
## [103] MASS_7.3-51.6                 gtools_3.8.2                 
## [105] assertthat_0.2.1              pkgload_1.0.2                
## [107] openssl_1.4.1                 rprojroot_1.3-2              
## [109] withr_2.2.0                   GenomicAlignments_1.25.0     
## [111] Rsamtools_2.5.0               GenomeInfoDbData_1.2.3       
## [113] hms_0.5.3                     grid_4.0.0                   
## [115] coda_0.19-3                   bbmle_1.0.23.1               
## [117] numDeriv_2016.8-1.1           shiny_1.4.0.2                
## [119] tinytex_0.22